Follow Binomial lab on F6S
[TFIIB-TBP-DNA]
effect of each of the mutations on the course of biochemical reactions.
Determine the effect of each of the mutations on the course of biochemical reactions.
RNAPII transcription occurs in three steps: initiation, elongation, and termination. Initiation
involves the recognition of core promoter elements on DNA by RNAPII and general transcription factors and synthesis of the first few nucleotides of the RNA transcript. The steps in initiation were defined biochemically using purified factors and order-of-addition experiments, but larger assemblies of multiple factors may in fact engage promoters in vivo. A key step in initiation is promoter binding by TFIID, a multi-subunit factor containing TATA-binding protein (TBP) and TBP-associated factors (TAFs). Canonical promoters contain a TATA box (consensus sequence TATA(A/T)A(A/T)(A/G)) around 30 base pairs upstream of the transcription start site. However, TFIID binding, through additional core promoter elements recognized by TAFs, is also essential for transcription at non-TATA promoter sites. The TBP-promoter complex is stabilized by subsequent binding of TFIIA and TFIIB,
with TFIIB playing a key role in subsequent recruitment and positioning of RNAPII. The preinitiation form of RNAPII is thought to bind the promoter in a complex with TFIIF, which stabilizes the complex of RNAPII with the promoter and other initiation factors and helps to ensure that RNAPII initiates transcription at the appropriate location.
[Therapeutic Targeting of the General RNA Polymerase II Transcription Machinery]
Before RNA synthesis commences, RNAPII is also bound by Mediator, a 23-subunit assembly
that further stabilizes the initiating RNAPII complex and acts as a physical link to gene-specific transcriptional activators bound to regulatory sites on DNA. Mediator is a dynamic complex composed of head, middle, tail, and kinase modules [10]. The head and middle modules are essential for cell viability and global RNAPII transcription, and structural studies demonstrate that these modules make key contacts with the initiating RNAPII complex
[Therapeutic Targeting of the General RNA Polymerase II Transcription Machinery]

Mediator bound at the core promoter
[Therapeutic Targeting of the General RNA Polymerase II Transcription Machinery]

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AA change: R196Q
¹ of Case:1/0
Desease type:adenomas and
adenocarcinomas
AA change: R208Q
¹ of Case:2/1
Desease type:
adenomas and
adenocarcinomas
AA change: K254N
¹ of Case:1/0
Desease type:adenomas and adenocarcinomas
Symbol: TBP
Name: TATA box binding protein
Synonyms: GTF2D1
SCA17
TFIID
Symbol: GTF2B
Name: general transcription factor IIB
Synonyms: TFIIB
Symbol: GTF2A2
Name: general transcription
factor IIA, 2, 12kDa
Synonyms: HsT18745
TFIIA
LET'S GO!
AA change: K178R
¹ of Case:1/-
Desease type:
adenomas and
adenocarcinomas
AA change: K189E
¹ of Case:1/alive
Desease type:Transitional
cell papillomas and
carcinomas
AA change: R193Q
¹ of Case:2
Desease type:
adenomas and
adenocarcinomas
AA change: R248K/M
¹ of Case:1/1
Desease type:
nevi and melonomas
AA change: G279D
¹ of Case:1/-
Desease type:
adenomas and
adenocarcinomas
AA change: R248K/M
¹ of Case:1/1
Desease type:
nevi and melonomas
  1. Choose a mutation.
  2. Choose a biochemical reaction.
  3. Get Information
AA change: L15F
¹ of Case:1/-
Desease type: cystic,
mucinous and serous
neoplasm
AA change: E21V
¹ of Case:1-
Desease type:
plasma cell tumors
AA change: S25T
¹ of Case:1/alive
Desease type:nevi and
melanomas
AA change: N77H
¹ of Case:1/0
Desease type:
adenomas and
adenocarcinomas
AA change: Q35E
¹ of Case:1/-
Desease type:
ductal and lobular
neoplasm
AA change: F67L
¹ of Case:1/0
Desease type:
adenomas and
adenocarcinomas,
AA change: D68N
¹ of Case:1/alive
Desease type:squamous cell
neoplasms
Mutations have been identified
that are in the region of
interacting polypeptide
chains during trimer formation
TAF4-T2AG-CH3
for two different structures: the presence of a DNA TATA box and the absence of a DNA TATA box
AA change: C68F
¹ of Case:1/alive
Desease type:squamous cell
neoplasms
Symbol: TBP
Name: TATA box binding protein
Synonyms: GTF2D1
SCA17
TFIID
Symbol: GTF2B
Name: general transcription factor IIB
Synonyms: TFIIB
AA change: K178R
¹ of Case:1/-
Desease type:
adenomas and
adenocarcinomas
AA change: K189E
¹ of Case:1/alive
Desease type:Transitional
cell papillomas and
carcinomas
AA change: R193Q
¹ of Case:2
Desease type:
adenomas and
adenocarcinomas
AA change: R248K/M
¹ of Case:1/1
Desease type:
nevi and melonomas
AA change: G279D
¹ of Case:1/-
Desease type:
adenomas and
adenocarcinomas
AA change: R248K/M
¹ of Case:1/1
Desease type:
nevi and melonomas
  1. Choose a mutation.
  2. Choose a biochemical reaction.
  3. Get Information
Mutations have been identified
that are in the region of interacting polypeptide chains during trimer formation
TAF4-T2AG-CH3 for two different structures: the presence of a DNA TATA box and the absence of a DNA TATA box
AA change: R196Q
¹ of Case:1/0
Desease type:adenomas and
adenocarcinomas
AA change: R208Q
¹ of Case:2/1
Desease type:
adenomas and
adenocarcinomas
AA change: K254N
¹ of Case:1/0
Desease type:adenomas and adenocarcinomas
Symbol: GTF2B
Name: general transcription factor IIB
Synonyms: TFIIB.
Each molecular complex is characterized by its stability value lg(cond(W)), while the formation of each complex is characterized by its forward and reverse chemical reaction constants Kn and K-n
Symbol: TBP
Name: TATA box binding protein
Synonyms: GTF2D1
SCA17
TFIIB
TBP
DNA
[TFIIB-TBP-DNA]
4.6375_________ _____5.265e-19___________ 1.213e-23______ 6.266e-32
__number ___________________ max _________________min _________________error condition__________________________________________________________computational SVD
4.681____________________5.929e-19_________1.235e-23___________5.191e-19
__number ___________________ max _________________min _________________error condition__________________________________________________________computational SVD
2.643____________5.1678e-19______________1.174e-21____________6.478e-32
__number ___________________ max _________________min _________________error condition__________________________________________________________computational SVD
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